PySCeS 0.9.0 has been released

Finally, after far too long, I'm happy to release a new version of PySCeS. This release has many bug fixes and provides a diverse range of new features, including:

• parallel parameter scanning


• generalized supply demand analysis


• exporting simulations as SED-ML (including COMBINE archives)


• support for scanning moiety totals


• compatbility support for the latest versions of scipy/numpy


• enhanced plotting support e.g. users may now choose the Matplotlib backend

This hopefully is the start of a whole new development/maintenance cycle, more news on the PySCeS website (http://pysces.sf.net) and thanks to Che for helping to debug an irritating Windows issue.

 

Writing out arrays and linked lists with pysces.write.*

PySCeS array export facilities have been expanded with a new set of array export functions. This includes exporting arrays and linked lists (lists of lists) to various flavours of text file.

These methods are either fully customizable and generic or specifically tailored for writing CSV (comma) and Text (<tab> delimited) files that include the array data and optionally row/col labels. They are all available in the ''pysces.write.*'' module (see documentation/docstrings for details).

In [3]: pysces.write.
pysces.write.exportArray2CSV
pysces.write.exportArray2TXT
pysces.write.exportLabelledArray
pysces.write.exportLabelledArray2CSV
pysces.write.exportLabelledArray2TXT
pysces.write.exportLabelledArrayWithHeader
pysces.write.exportLabelledArrayWithHeader2CSV
pysces.write.exportLabelledArrayWithHeader2TXT
pysces.write.exportLabelledLinkedList